Migrate to HPC

Abel is shutting down and the system taking over for Abel is situated in Trondheim. For the first time in decades UiO will no longer host a national general-purpose HPC system. This means that we no longer will have the App-Node set-up currently used. This workshop provides the basis of providing a guide for App-Node users to migrate to a Cluster based HPC system.

Please note the new date 31-10-2019.

Event registration : https://nettskjema.uio.no/a/125898

Time Topic Lecturer
09:00 -09:45 APP-nodes - how and for what are they used for Discussion session
10:00 - 10:15 Saga https://documentation.sigma2.no/quick/saga.html Sabry Razick
10:15- 11:45

Introduction to queue management system

https://sabryr.github.io/hpc-intro/

Tools: http://folk.uio.no/sabryr/blast/Saga_tools.pdf

Sabry Razick
12:00 - 12:45 Lunch break (you need to provide your own lunch)
13:00 - 14:45

Job scripts/Saga user documentation

https://documentation.sigma2.no/jobs/saga_job_scripts.html

Exercise: http://folk.uio.no/sabryr/blast/Exercise.pdf

TBA
15:00 - 15:45

Data transfers to SAGA and between SAGA and NIRD'

slides

Thierry Toutain

 

Published Sep. 23, 2019 3:56 PM - Last modified Oct. 31, 2019 12:39 PM