MBV-INF9410 – Bioinformatics for Molecular Biology
Schedule, syllabus and examination date
Changes in the course due to coronavirus
Autumn 2020 we plan for teaching and examinations to be conducted as described in the course description and on semester pages. However, changes may occur due to the corona situation. You will receive notifications about any changes at the semester page and/or in Canvas.
Spring 2020: Teaching and examinations was digitilized. See changes and common guidelines for exams at the MN faculty spring 2020.
This course will introduce students to resources and tools in bioinformatics for molecular biology research. Scientists actively developing and applying bioinformatics tools in their research will talk about their fields in general as well as their own work. Students must bring a lap-top for in-course demonstrations as well as practical lab exercises. The course is mainly intended for biology students but is also open for students with a computer science or related background wishing to extend their knowledge of informatics problems in the biological domain.
This course seeks to provide students with a broad overview practical tools used in bioinformatics. Each subject area will introduce requisite background in statistics or other mathematical concepts.
Some topics covered:
• Review of probability and statistics with special emphasis on high throughput analysis
• Working in a shell environment
• Using programming and scripting to develop analytical pipelines
• Biological databases
• Sequence-read mapping
• Structural biology: tools, predictors and 3D modeling
• Introduction to virtual screening and drug discovery
• High throughput sequencing data analysis
• Gene lists and over-representation analysis
Admission to the course
PhD candidates from the University of Oslo should apply for classes and register for examinations through Studentweb.
If a course has limited intake capacity, priority will be given to PhD candidates who follow an individual education plan where this particular course is included. Some national researchers’ schools may have specific rules for ranking applicants for courses with limited intake capacity.
PhD candidates who have been admitted to another higher education institution must apply for a position as a visiting student within a given deadline.
The courses MBV-INF9410 and MBV-INF4410 have joint admission. Applicants are ranked by the following criteria:
- Master students and PhD candidates at the MN faculty who have the course as part of the approved curriculum.
- Other PhD candidates and visiting PhD candidates.
- Students with admission to single courses on master’s level and exchange students
Applicants are ranked by credits in each group; all applicants within 1st rank before applicants in 2nd etc.If admission is limited to a fixed number of participants, admission will be decided by drawing lots for students who are ranked equally
Recommended previous knowledge
This course is open to students studying biology, mathematics or computer science. Students must have at least 120 study points to apply. Students must have a basic understanding of biology/molecular biology at least corresponding to 10 university study points in molecular biology or similar.
The course might be relevant also for students without this background, but candidates should in this case contact the course coordinator before signing up.
- 8 credits overlap with MBV-INF4410 – Bioinformatics for Molecular Biology.
The course is given as five weeks intensive course that consists of:
A written assignment given during the course that must be approved.
It is only necessary to be physically present at the UiO campus for certain parts of the course.
Attendance is mandatory for the first lecture, also for those on the waiting list. You will lose your seat on the course if documentation for absence is not provided to the student administration email@example.com before the first lecture.
Access to teaching:
A student who has completed compulsory instruction and coursework and has had these approved is not entitled to repeat that instruction and coursework. A student who has been admitted to a course, but who has not completed compulsory instruction and coursework or had these approved, is entitled to repeat that instruction and coursework, depending on available capacity.
One week take home exam.
Obligatory assignments must be completed and approved before the exam and in the same semester.
An additional, limited, oral examination may be arranged in cases where this is necessary for the student evaluation.
It will also be counted as one of the three attempts to sit the exam for this course, if you sit the exam for one of the following courses: MBV-INF4410 – Bioinformatics for Molecular Biology.
Examination support material
Students may use notes and handouts collected throughout the course.
Language of examination
The examination text is given in English.You may submit your response in Norwegian, Swedish, Danish or English.
Grades are awarded on a pass/fail scale. Read more about the grading system.
Resit an examination
This course offers both postponed and resit of examination. Read more: