Dette emnet er erstattet av IN4030 – Introduksjon til bioinformatikk.

Syllabus/achievement requirements

Material available on Fronter

  • lecture presentations
  • articles
  • exercises and their solutions

Books

  • Philip Compeau & Pavel Pevzner (2015) Bioinformatics Algorithms: An Active Learning Approach, 2nd Edition, Vol. I. Active Learning Publishers. ISBN 978-0-9903746-1-9.
  • Philip Compeau & Pavel Pevzner (2015) Bioinformatics Algorithms: An Active Learning Approach, 2nd Edition, Vol. II. Active Learning Publishers. ISBN 978-0-9903746-2-6.

This is a two-volume set of books. There is a website for the books with additional material and information.

 

Detailed list of sections of the books that are included:

Volume I

Chapter 1 (Intro)
Only the following sections are part of the syllabus:

  • Big-O notation (page 52)
  • Directionality of DNA strands (page 59)

Chapter 2 (Motif discovery)
The entire chapter is part of the syllabus, except:

  • Epilogue (pages 104-106)
  • Charging station (pages 107)
  • Detour: Buffon’s needle (109-112)

Chapter 3 (Genome Assembly)
The entire chapter is part of the syllabus, except:

  • Detours (some) (pages 172-179)

Chapter 4 (Brute force algorithms)
This chapter is not part of the syllabus.

Chapter 5 (Dynamic programming)
The entire chapter is part of the syllabus, except:

  • Detours (some) (pages 282-284)

Chapter 6 (Combinatorial problems)
Only the following sections are part of the syllabus:

  • Genomic dot-plots (page 325-328)

Volume II

Chapter 7 (Phylogeny)
The entire chapter is part of the syllabus, except:

  • Detours (all) (pages 51-65)

Chapter 8 (Clustering)
The entire chapter is part of the syllabus, except:

  • Detours (some) (pages 111, 113-117)

Chapter 9 (Mapping and searching)
The entire chapter is part of the syllabus, except:

  • Detours (some) (pages 170-176)

Chapter 10 (Hidden Markov Models)
The first part of the chapter is part of the syllabus (pages 178-217)

Chapter 11 (Proteomics)
Only the following sections are part of the syllabus:

  • Gene prediction (page 273-274)
Publisert 1. nov. 2016 11:11 - Sist endret 23. mai 2017 09:42