INF-BIO9120 – High Throughput Sequencing technologies and bioinformatics analysis

Schedule, syllabus and examination date

Choose semester

Course content

The course provides knowledge of high throughput sequencing technologies and the analysis of data from various sequencing platforms and applications. Control of quantity and quality of data, analysis of small RNA-seq and mRNA-seq, de novo genome assembly, and variant calling. The course will also make use of the frameworks Galaxy and The Genomic Hyperbrowser in the analyses.

Learning outcome

  • The students will achieve a basic understandingof how to analyse different genomic data using different high throughput sequencing technologies.
  • You will be able to perform quantity- and quality control of sequencing data.
  • You can perform analysis of data from exome sequencing, micro RNA and mRNA sequences.
  • You can perform variant calling and identify SNPs and indels.
  • You have knowledge about de novo assembly of genomes.
  • You are able to use the frameworks Galaxy and The Genomic Hyperbrowser.
  • You have knowledge on current methods

Admission

PhD candidates from the University of Oslo should apply for classes and register for examinations through Studentweb.

If a course has limited intake capacity, priority will be given to PhD candidates who follow an individual education plan where this particular course is included. Some national researchers’ schools may have specific rules for ranking applicants for courses with limited intake capacity.

PhD candidates who have been admitted to another higher education institution must apply for a position as a visiting student within a given deadline.

Prerequisites

Recommended previous knowledge

We recommend that students with informatics background has INF4350 and students with a background from biology or molecular biology has MBV3070.

Teaching

Two weeks of intensive teaching during the semester.

2/3 attendance is required.

Examination

Home exam. The candidates will get a additional curriculum and extended home exam (one extra assignment) compared to the master version of the course (INF-BIO5120).

Grading scale

Grades are awarded on a pass/fail scale. Read more about the grading system.

Explanations and appeals

Resit an examination

This course offers both postponed and resit of examination. Read more:

Withdrawal from an examination

It is possible to take the exam up to 3 times. If you withdraw from the exam after the deadline or during the exam, this will be counted as an examination attempt.

Special examination arrangements

Application form, deadline and requirements for special examination arrangements.

Facts about this course

Credits

5

Level

PhD

Teaching

Every autumn

Examination

Every autumn

Teaching language

English