Course content

Phylogenomics is a group of techniques within the larger fields of phylogenetics and genomics, and focuses on genome data and evolutionary reconstructions. Phylogenomics draws information by comparing entire genomes, or at least large portions of genomes.

Learning outcome

Advances in high-throughput sequencing and genomics have revolutionized research in evolutionary biology and systematics. The use of genomics data in phylogenetic analyses has brought new challenges in terms of data handling and analysis. This course aims to help those that have basic experience in bioinformatics and molecular phylogenetics, and have projects focused on high-throughput sequencing data and phylogenetics, to become acquainted with tools, programs and pipelines for phylogenomics and want to contact phylogenomic studies beyond the standard also addressing potentially confunding biases in their datasets.

Admission to the course

PhD candidates from the University of Oslo should apply for classes and register for examinations through Studentweb.

If a course has limited intake capacity, priority will be given to PhD candidates who follow an individual education plan where this particular course is included. Some national researchers’ schools may have specific rules for ranking applicants for courses with limited intake capacity.

PhD candidates who have been admitted to another higher education institution must contact the department of biosciences before April 10th at studieinfo@ibv.uio.no

 

 

In addition to registering through Studentweb, all students must apply for admission at the link at: https://www.forbio.uio.no/events/courses/2018/phylogenomics2018.html

Deadline April 15th.

The course is limited to 12 students. The course is arranged by the National research School in Biosystematics, ForBio. Priority will be given to members of ForBio.

BIO4200, BIO9905FBI1

Pre-course exercises on command line, regex and UNIX will be offered.

Overlapping courses

Teaching

The workshop will be given in fall 2021 and will consist of lectures and hands-on work aiming to provide the participants with a good working knowledge of genomic data for phylogenomics, and to become acquainted with tools, programs and pipelines for phylogenomics. To encourage discussion, participants will work in pairs most of the time. All exercises will be carried out using example data handed out by the teachers during the workshop, but all exercises and results can be readily transposed to individual research data.

Examination

The examination consists of independent application of the learned methods to simulated datasets on the final course day. The results of this application must be presented and approved to pass the course and receive a grade and credit.

Exam attempts

It will  be counted as one of the three attempts to sit the exam for this course, if you sit the exam for one of the following courses: BIOS9905FBI2 – Phylogenomics

Language of examination

The examination text is given in English, and you submit your response in English.

Grading scale

Grades are awarded on a pass/fail scale. Read more about the grading system.

More about examinations at UiO

You will find further guides and resources at the web page on examinations at UiO.

Last updated from FS (Felles studentsystem) Oct. 14, 2026 6:20:42 AM

Facts about this course

Level
PhD
Credits
5
Teaching
Spring and autumn

The course is last held spring 2018

Examination
Spring and autumn .

Examination is last held spring 2018

Teaching language
English

Contact

Department of Biosciences